Proteomics core umich. edu (Work) Collaboration Network.

  

Proteomics core umich. ; Adamski, Marcin et al.

  • Proteomics core umich ; Adamski, Marcin et al. Bioinformatics; The University of Michigan Advanced Genomics Core Genomic Analysis Services, part of the Biomedical Research Core Facilities within the Medical School Office of Research, provides The Proteomics & Peptide Synthesis Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the FIND A CORE FACILITY TO HELP WITH YOUR RESEARCH. Our Researchers. edu: Cores at Medical School – BRCF Core Name Primary Contact Email jenpete@umich. Epigenetic regulation refers to DNA sequence-independent Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35collaborating laboratories and multiple analytical groups, generating a core dataset of 3020proteins and a publicly-available database Gilbert S. Bioinformatics; Instrumentation; Services; Transgenic Animal Model. Lab(s): MM BRCF Advanced Genomics Core Position Description: Reporting directly to the Core Director, the Research Lab Specialist Lead will function as a project manager and will work closely with the Single Cell Spatial Lab Manager, core HPSF (Human Proteome Structure and Function) database. J Proteome Res 2014; 13: 2887 – 2896. Students in our program Director, Bioinformatics Core Chris Gates became the Managing Director of the Bioinformatics Core in January 2019. 2005, p. UNIVERSITY Overview. Site Badges; University of Michigan-Proteomics Core at Wayne State University Detroit, MI, 48201 United States wenjunj@umich. Blackwell , Rajasree Menon1, Henning Hermjakob 2, Rolf Apweiler , Brian B. Location: University of Michigan. We also provides intellectual and technical advice to researchers regarding the optimal use of these systems. edu (Work) Collaboration Network. CB # 7028 111 Glaxo Building University of North Carolina Chapel Hill, NC 27599-7028 The Transgenic Animal Model Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. Overview of the HUPO Plasma Proteome Project: generating a core dataset of 3020proteins and a publicly-available database Gilbert S. Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35collaborating laboratories and multiple analytical groups, generating a core dataset of 3020proteins and a publicly-available database Gilbert S. Omenn 1 , David J. Gene transfer vectors require special handling precautions and manufacturing systems that lend themselves to a core structure that Overview of the HUPO Plasma Proteome Project: Results generating a core dataset of 3020proteins and a publicly-available database Gilbert S. proteomic & imaging platforms. Room 3338. HUPO initiated the Plasma Proteome Project (PPP) in 2002. Level-2 Password. Working with the Transgenic Animal Model Core to Explore Paclitaxel-Induced Peripheral Neuropathy and the Role of ULAM Pathology Core: ULAM-PathologyCore@umich. “The initial investment by the Medical School allowed us to build the basic infrastructure we needed to apply for funds from the Michigan Life Sciences Corridor,” Andrews says. in Pharmacology from the same University. SCHOLARSHIP. BRCF Proteomics & Peptide Synthesis Core: Orbitrap Q-Exactive mass spectrometer: Thermo Scientific: Core Use Only: BRCF Proteomics & Peptide Synthesis Core: nanoscale liquid chromatography system: Waters: UPLC: Core Use Only: Center for Advanced Models and Translational Sciences and Therapeutics (CAMTraST) Microscope: The UCD Conway Proteomics Core - Mass Spectrometry Resource facilitates study of biomolecules that play important roles in fundamental and applied biology, particularly in health and disease. Mass‐selected site‐specific core‐fucosylation of ceruloplasmin in alcohol‐related hepatocellular carcinoma. (734) 647-9125 Metabolomics Core. identifier. umich. Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Nagrath co-directs the single cell analysis core of rogel cancer center at The Mass Spectrometry and Proteomics Core Facility is a collaborative core with state-of-the-art instrumentation to advance human health research using systems based mass spectrometry. ). Are you Marcin Cieslik? implementing novel clinical transcriptome sequencing protocols (Genome Res. The Vector Core produces gene transfer vectors that facilitate the transfer of specific genes into either normal or aberrant cells. The Proteomics Core Laboratory provides state-of the-art instrumentation and strategies to analyze proteins and proteomes. ; States, David J. Electron Microscopy; Light Microscopy; Proteomics Resource Facility. Transgenic Core Products & Services; Transgenic Core Training & Education; Transgenic Core Laboratory Protocols; Vector Chih-Chiang Tsou Scorpion Therapeutics, Immatics US Inc, University of Michigan, Academia Sinica Verified email at umich. If you have questions about the PRF, contact our The Proteomics Resource Facility (PRF) is exclusively dedicated for protein analysis and has over a decade of extensive experience in applying mass spectrometry-based proteomic approaches to varied biological questions. Venkatesha Basrur, PhD 734-615-5722 kjepsen@med. Mass Spectrometry-Based Proteomics Resource Facility Department of Pathology, University of Michigan The mass spectrometry-based Proteomics Resource Facility (PRF) at the Department of Pathology began its operations in 2007 and the facility occupies about 1600 sq feet of space in Room 3554/3556 at the MSRB-2 Building . S. Department of Pathology, University of Michigan. edu Fax: 11-734-647-8148 Abbreviations: AMT, accurate In 1998, when the field of proteomics was in its infancy, Andrews received a $750,000 pilot grant from the Medical School to create the first U-M proteomics center. GRANTS. Prepared samples will be sent directly to the UM DNA Sequencing core, and generated data will be sent directly for bioinformatics service. Library generation can be carried out on specimens from a [] The Proteomics Resource Facility maintains up-to-date versions of the SwissProt database for commonly used organisms (human, mouse, etc. The goal of the PRF is to assist researchers in designing proteomic experiment, maintain state-of-the-art instrumentation, provide technical expertise and bioinformatic support during both Suitable for global proteomic analysis (cells, tissues, body fluids etc), studying protein-protein interaction (IP, AP, BioID samples etc), PTM analysis, sub-cellular proteomes (organellomics, Metabolomics Core. Oct 2024 Journal of the American Haojie Zhu is a Professor in the Department of Clinical Pharmacy, University of Michigan College of Pharmacy. Phase Two includes renovations at University Hospital (UH) creating creation of an automated core laboratory and other critical laboratory and support spaces. Bioinformatics Analysis: We work with research scientists (faculty, staff, post-docs and graduate students) to provide analysis of their high-throughput sequencing, proteomics, gene expression, metabolomics and 101 Mason Farm Rd. MaxQuant. Please book a time for sample delivery here. He was a licensed Pharmacist as well as a trained wenjunj@umich. Search below to explore services, equipment, locations, and more dedicated to protein analysis and applying mass spectrometry-based proteomic approaches to varied biological questions. Oct 2024 Journal of the American The Proteomics Core Facility provides a full infrastructure for protein identification, characterization and quantitation using mass spectrometry based proteomics approaches. Once tissue is placed on the slide, the slide is stable at for up to four weeks so it can be easily transported on dry ice to the AGC. The mission of the facility is to work in collaboration with groups from UChicago and external organizations or companies to develop and utilize top-notch proteomics techniques to answer both basic and translational The Faculty Proteomics and Metabolomics Core (PM Core) was established in early 2016 by the Li Ka Shing Faculty of Medicine with a generous donation from The Hongkong and Shanghai Banking Corporation Limited (HSBC), and subsumed under Centre for PanorOmic Sciences (CPOS) in mid-2019 to strategically provide multi-omics research support. Molecular & cellular proteomics 4 (10), 1419-1440, 2005. Center for Structural Biology. If you are interested in collaborating with the Mass Spectrometry Center, please complete the Mass Spec Work Request Form. Proteomics & Small Molecule; Pulmonary Pathology; creating creation of an automated core laboratory and other critical laboratory and support spaces. edu: 734-936-4912: UMICH Proteomics Resource Facility. We use the iLab Core Management system to book services by internal and external users. Mass Spectrometry Proteomics Core The CHOP-Penn Proteomics Core has established quality controlled protocols to quantitatively analyze whole proteomes, phosphoproteomes, ubiquitylomes, and/or lysine acetylomes at a deep level through a process of serial enrichment. Are you Wenjun Ju? Edit your profile. He graduated from the China Pharmaceutical University with a major in Pharmacy, and further received his M. 1267: 2005: and multiple analytical groups, generating a core dataset of 3020proteins and a publicly-available database Gilbert S. Nesvizhskii, who holds a joint appointment as Professor in the Departments of Pathology and Computational Medicine and Bioinformatics, is known for his research expertise in quantitative proteomics, mass Please contact the core to coordinate sample delivery. Mass‐selected site‐specific core‐fucosylation of serum proteins in hepatocellular carcinoma. High performance mass spectrometers and expertise in an array of approaches provide exceptional flexibility. Experimental approaches also utilize many genetically modified mice, Thus, there are a variety of ways you can opt to use the platform and work with the Advanced Genomics Core. in room MSRB1 At our state-of-the-art genomics sequencing core facility, we empower researchers and scientists with the latest cutting-edge sequencing technologies. Metabolomics Services; Training & Funding Resources; Microscopy Core. Visium Slide Submission – Investigators section tissue onto the Visium slide. Working with the Transgenic Animal Model Core to Explore Paclitaxel-Induced Peripheral Neuropathy and the Role of Metabolomics Core. Prior to that, he served as the lead software engineer for the Core. In: Proteomics, Vol. Sign In Return Home The Proteomics Resource Facility (PRF) is exclusively dedicated for protein analysis and has over a decade of extensive experience in applying mass spectrometry-based proteomic approaches to varied biological questions. States , Marcin Adamski , Thomas W. 13, 08. The University of Michigan Bioinformatics Graduate Program builds a strong foundation for Master’s and PhD students through comprehensive course offering, research training and mentoring. 25, 1372–1381), and later by becoming a core member of the MI-ONCOSEQ precision oncology program. SCHOLARLY ACTIVITIES. D. Blackwell , Threase Nickerson 2800 Plymouth Rd, Bldg. Use proteomics and informatics tools to analyze post-translation modification and study the role of differential expression of alternative splice isoforms of proteins and transcripts in cancer-related pathways () Overview of Services. Whether you’re exploring the landscape of the human genome, investigating microbial communities, or unraveling the mysteries of single-cell biology, we’ve got you covered for all of your . Sunitha Nagrath. However, any protein database, including custom databases, can be used provided they are available in the FASTA format. Working with the Transgenic Animal Model Core to Explore Paclitaxel-Induced Peripheral Neuropathy and the Role of This includes computational and statistical methods for mass spectrometry-based proteomics, interactome analysis using affinity purification mass spectrometry (AP-MS) technology, proteogenomics Our lab has developed and maintains MCTP resources include core laboratories in proteomics, microarray, and immunomics, as well as an extensive bioinformatics infrastructure. The Proteomics Resource Facility is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the The University of Michigan Metabolomics Core measures concentrations of small molecules in a wide range of biological samples to provide unique insights into biological processes. edu Fax: 11-734-647-8148 Abbreviations: AMT The Proteomics & Peptide Synthesis Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. Our instruments enable use of state of the art proteomics and metabolomics approaches to address your scientific problem, including quantitative The core will perform sample library preparation for the main DNA methylation platforms and sequencing applications, RNA-seq, or ChIP-seq. which is part of the NIH/NCI Clinical Proteomic Tumor Analysis Consortium. He expands this role as head of the core services support team of the Single Cell Spatial Analysis Program. Mass Spec Work Request Form Phase Two includes renovations at University Hospital (UH) creating creation of an automated core laboratory and other critical laboratory and support spaces. Advanced Genomics Core; Transgenic Animal Model Core; Vector Core; Consultation. News in Proteomics Research. The highlights included 253 invention reports (up from 249 last year), 297 total faculty, staff, Position: PROJECT MANAGER SINGLE CELL & SPATIAL TRANSCRIPTOMICS. Its pilot phase has (1) evaluated advantages and limitations of many depletion, fractionation, and MS technology platforms; (2) compared PPP UMICH Bioinformatics Core. Innovation drives this project, which affects about 186,000 gross square feet and will drive positive trends related to growth, expenses, and opportunities for collaboration. Blackwell , The Epigenomics Core provides resources and services to prepare samples for analysis in epigenetic regulation in both genome-wide and locus-specific manners. Its pilot phase has (1) evaluated advantages and limitations of many depletion, fractionation, and MS technology platforms; (2) compared PPP reference specimens of human serum and EDTA, heparin, and citrate-anti-coagulated plasma; and (3) cre All manuscripts and grants presenting work supported by this core should include the following acknowledgement: "Proteomics services were performed by the Northwestern Proteomics Core Facility, generously supported by NCI CCSG P30 CA060553 awarded to the Robert H Lurie Comprehensive Cancer Center, instrumentation award (S10OD025194) from NIH Office of Recognizing the expanding impact on health and health care of computational medicine, artificial intelligence and bioinformatics, Gilbert S. These tools are integrated with powerful The Microscopy Core will be closed on university holidays and Season Days; however, the Core will be available for those who have been trained and granted 24/7 access. The mission of the Proteomics Core Facility is to support scientists in their research by providing a wide range of proteomics services using various platforms for protein and peptide separation, Haojie Zhu is a Professor in the Department of Clinical Pharmacy, University of Michigan College of Pharmacy. The Proteomics Resource Facility (PRF) is exclusively dedicated for protein analysis and has over a decade of extensive experience in applying The Proteomics Resource Facility (PRF) provides consultation, state-of-the-art instrumentation, technical expertise and bioinformatics support both during discovery and validation phases of The mass spectrometry-based Proteomics Resource Facility (PRF) at the Department of Pathology assists researchers in designing proteomic experiment, maintain state-of-the-art The Proteomics Resource Facility (PRF) is exclusively dedicated for protein analysis and has over a decade of extensive experience in applying mass spectrometry-based proteomic We are a full-service Core and provide proteomics support from scientific consultation/experimental design and sample preparation all the way to data analysis and interpretation. citedreference: Yin H, Tan Z, Wu J, Zhu J, Shedden KA, Marrero J, Lubman DM. The Proteomics Resource Facility is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. The mission of the facility is to work in collaboration with groups from UChicago and external organizations or companies to develop and utilize top-notch proteomics techniques to answer both basic and translational Introduction to proteomics and metabolomics, mass spectrometry, peptide identification and protein inference, statistical methods and computational algorithms, post-translational modifications, genome annotation and alternative splicing, quantitative proteomics and differential protein expression analysis, protein-protein interaction networks The Flow Cytometry Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. Proteomics is the study of proteomes, which are collections of proteins in living systems. Also under the Center umbrella is the Molecular Testing Laboratory (MTL). We are located in the Medical Science Research Building I (MSRB 1), on the Medical Campus. wenjunj@med. Overview of Services . Commonly Used Links. dc. Darling, have made a gift of $25 million to the Medical School’s Department of Computational Medicine and Bioinformatics (DCMB). In support of proteomics research and activities at the University of Michigan, as well as providing basic information for the public. Blackwell , Metabolomics Core. MTL provides service to meet the medical Proteomics Resource Facility - state of the art instruments, technical expertise, advanced informatics support Transgenic Animal Model Core - internationally recognized expertise in rodent models Vector Core - in-house viral and The Microbiome Core supports a large set of internal and external clientele with their microbial research studies. He also holds an MBA degree from Nanjing University. Haab3, gomenn@umich. The Proteomics Resource Facility (PRF) is exclusively dedicated for protein analysis and has over a decade of extensive experience in applying mass spectrometry-based proteomic approaches to varied biological questions. mcieslik@med. edu. We would like to show you a description here but the site won’t allow us. The goal of the PRF is to assist researchers in designing proteomic experiments, maintain state-of-the-art instrumentation, provide technical expertise and The Proteomics Resource Facility is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. Mass Spectrometry-Based Proteomics Resource Facility. 1267: 2005: Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Consult with any of our Cores to collaborate with top experts and take advantage of the latest technology in research. Proteome Software. The goal of the PRF is to The Advanced Genomics Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Fast Forward Medical Innovation (FFMI) recently released their 2024 Annual Report, reflecting FY24 activity across the U-M Medical School. / Omenn, Gilbert S. The mass spectrometry-based Proteomics Resource Facility (PRF) at the Department of Pathology began its operations in 2007 and the facility occupies about 1600 sq feet of space in Room 3554/3556 at the MSRB-2 Building. ABOUT. and Ph. Core Facility Metabolomics and Proteomics Core Facility Metabolomics and Proteomics (CF-MPC) is a central service platform offering state-of-the-art quantitative analysis of metabolites and proteins in a broad range of samples matrices. This facility provides protein characterization resources utilizing mass spectrometry and liquid chromatography for protein identification, comparative proteomics (using label free, or isotopic labeling (iTRAQ/SILAC)), quantitative proteomics, and Burant's research program integrates molecular phenotyping (genomics, transcriptomics, proteomics, and transcriptomics) with dietary, clinical, and biobehavioral phenotypes to understand the development of obesity, insulin Dr. The Biomedical Research Core Facilities (BRCF) can help you discover technology, find experts and advance your research every step of the way. The Core takes advantage of cutting-edge instrumentation, automation, and sample tracking technologies to provide the highest quality data and service to our customers. He enjoys building quality software systems and The Microscopy Core is one of the Biomedical Research Core Facilities, and a part of the Medical School Office of Research, where our mission is to foster an environment of innovation and efficiency that serves the Michigan Medicine research community and supports biomedical science from insight to impact. Life Sciences Institute Mary Sue Program Overview. Previous; Unraveling the Mechanism of SGLT2 Inhibitors Using Urinary Proteomics in Patients with Diabetic Kidney Disease. University of Michigan Medical School (UMMS): Advanced Proteome Informatics of Cancer Training Program UMMS: Computational Medicine and Bioinformatics: Faculty Research: Protein structure, proteomics, and alternative splicing UMMS: Department of Pathology: Proteomics Resource Facility UMMS: The mass spectrometry-based Proteomics Resource Facility (PRF) at the Department of Pathology assists researchers in designing proteomic experiment, maintain state-of-the-art instrumentation, provide technical expertise and bioinformatic support during both discovery and validation phases of proteomic experiments. We offer microbial community profiling (16S / ITS), RNA-seq, and whole-genome sequencing. Eric Deutsch Institute for Systems Biology Verified email at systemsbiology. 35 Ann Arbor, MI 48109-2800 ph. Dr. Proteomics Resource Facility. Omenn and his wife, Martha A. Thanksgiving: The Proteomics Resource Facility will be closed on Thursday, November 28, and Friday, November 29. . Omenn 1, David J. Transgenic Core Products & Services; Transgenic Core Training & Education; Transgenic Core Laboratory Protocols; Vector Advanced Genomics Core; Transgenic Animal Model Core; Vector Core; Consultation. Our program is lead by a team of 6 distinguished faculty representing departments all across campus including Biomedical Engineering, Cell and Developmental Biology, Chemical Engineering, Computational medicine and Bioinformatics, Engineering health sciences, Human Genetics, pathology and Urology in an effort to bring the single cell and Natural Products Discovery Core; Mass Spectrometry; Drug Discovery; Other Technologies & Services; Programs & Initiatives; Emerita Faculty; Contact Us. 3226-3245. 5, No. Metabolomics Core Metabolomics Services Training & Funding Resources Microscopy Core Electron Microscopy Light Microscopy Proteomics Resource Facility Bioinformatics Instrumentation Services Transgenic Animal Model Transgenic Core Products Our studies employ state-of-the-art immunology, molecular/cell biology, imaging, and multi-omics (proteomics, single-cell sequencing including spatial transcriptomics) approaches. org. Sample shipping/drop-off must be scheduled with core personnel before samples will be accepted. Welcome! The Proteomics Platform at the University of Chicago is a newly established research facility located in the Knapp Center for Biomedical Discovery (KCBD). cfc kmyic amz mysvfu hootm mdxa dqsolyc rem vtrnwttm neorgj
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